Bayesian Analysis of Macroevolutionary Mixtures (BAMM)
Overview
Program for modeling complex dynamics of speciation, extinction, and trait evolution on phylogenetic trees.
Availability
| Cluster | Module/Version |
|---|---|
| BOSE | Not Available |
| BGSC | bamm/2.5.0 |
Note: You can simply use module load bamm to activate the most recently installed version of this software.
Sample Slurm Script
submit.sh
#!/bin/bash
# -- SLURM SETTINGS -- #
# [..] other settings here [..]
# The following settings are for the overall request to Slurm
#SBATCH --ntasks-per-node=32 # How many CPU cores do you want to request
#SBATCH --nodes=1 # How many nodes do you want to request
# -- SCRIPT COMMANDS -- #
# Load the needed modules
module load bamm # Load BAMM
Real Example
Has your research group used BAMM in a project? Contact the HPC Team and we'd be glad to feature your work.
Citation
Please include the following citation in your papers to support continued development of BAMM.
Rabosky DL (2014) Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees. PLoS ONE 9(2): e89543. https://doi.org/10.1371/journal.pone.0089543