Trinity

Overview

Trinity is a software for de novo transcriptome assembly, a process that reconstructs transcript sequences from RNA-Seq data without any reliance on a pre-exising genome.

Availability

Cluster	Module/Version
BOSE	trinity/2.15.2
BGSC	Not Available

How To Access

Access to Trinity is as simple as entering 'module load trinityrnaseq'

Real Example

Has your research group used Trinity in a project? Contact the HPC Team and we'd be glad to feature your work.

Citation

Please include the following citation in your papers to support continued development of NBIA Data Retriever.

Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, Amit I, Adiconis X, Fan L, Raychowdhury R, Zeng Q, Chen Z, Mauceli E, Hacohen N, Gnirke A, Rhind N, di Palma F, Birren BW, Nusbaum C, Lindblad-Toh K, Friedman N, Regev A. Full-length transcriptome assembly from RNA-seq data without a reference genome. Nat Biotechnol. 2011 May 15;29(7):644-52. doi: 10.1038/nbt.1883. PubMed PMID: 21572440.