Vcftools
VCFTools
Overview
Overview Here
Availability
| Cluster | Module/Version |
|---|---|
| BOSE | vcftools/0.1.16 |
| BGSC | Not Available |
Note: You can simply use "module load vcftools" to activate the most recently installed version of this software.
Arguments / Options
This is a list of arguments for the VCFTools command that we wanted to highlight. Use "man VCFTools" or man-guide-url for a full list.
| Option | Description |
|---|---|
| --argument | description |
Sample Slurm Script
submit.sh
#!/bin/bash
# -- SLURM SETTINGS -- #
# [..] other settings here [..]
# The following settings are for the overall request to Slurm
#SBATCH --ntasks-per-node=32 # How many CPU cores do you want to request
#SBATCH --nodes=1 # How many nodes do you want to request
# -- SCRIPT COMMANDS -- #
# Load the needed modules
module load VCFTools/<version> # Load VCFTools
Real Example
Has your research group used VCFTools in a project? Contact the HPC Team and we'd be glad to feature your work.
Citation
Please include the following citation in your papers to support continued development of VCFTools.
Citation Here